Stem-loop sequence tae-MIR1122a

Accession

MI0006184 (change log)

Previous IDs

tae-MIR1122

Description

Triticum aestivum miR1122 stem-loop

Gene family

MIPF0000382; MIR1122

Literature search

7 open access papers mention tae-MIR1122a
(34 sentences)

Stem-loop

   ------------------------------------------------------------------------------------------------------------------------auaaguacucccucuguuccuaa                    a     g        u     a     u       a   - aug 
5'                                                                                                                                                auacucccuccgucccaaaa uuuug cuuagauu gucua auacg auguauc agu c   u
                                                                                                                                                  |||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||||| ||| |    
3'                                                                                                                                                uaugagggaggcaggguuuu agaac gaaucuaa cagau uaugc uacauag uua g   u
   accaugugggagacaaggauuuauauacggaagaaucucuaaggugauaccugauguaugcuucauuuuacucacuuagaugugagauuuuauacagauauauguaggcauacaucaaacaucaccuuagagauuuuucugaa                    a     a        u     c     c       a   u auu 

Deep sequencing

197664 reads, 106 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Comments

Yao et al. misname this sequence miR506 in [1]. miR1122 is unrelated to mammalian miR-506;

Genome context

• Coordinates: 4B: 268039586-268039880 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0006184

Mature sequence tae-miR1122a

• Accession: MIMAT0005357
• Previous IDs: tae-miR1122
• Sequence: 96 - uagauacauccguaucuaga - 115
• Deep sequencing: 1459 reads, 116 experiments
• Evidence: experimental; cloned [1], RTPCR [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).