miRBase entry: tae-MIR1128

Stem-loop tae-MIR1128


Accession
MI0006190
Description
Triticum aestivum tae-MIR1128 precursor miRNA
Gene family
MIPF0000382; MIR1122

Literature search
6 open access papers mention tae-MIR1128
(10 sentences)

Sequence

486223 reads, 281 reads per million, 116 experiments
auaugagagcaugggugagaggugcuuaguUACUACUCCCUCCGUCCGAAAauacuugucaucaaaaugaauaaaaaaggggauguaucuagaacuaaaauacaucuagauacauccccuucuauccauuuugaugacaacuauuuccggacggagggaguaauugcuucuucuggcuuggcguuuaugu
(((((((.((..((((.(((((.....(((...(((((((((((((((.(((((.((((((((((((((.(((...(((((((((((((((((...........))))))))))))))))).))).)))))))))))))).))))).)))))))))))))))...))).))))).)))).)).)))))))

Structure
       a  au    g     ugcuu   UAC               A     c              a   aaa                 acua 
auaugag gc  gggu agagg     agu   UACUCCCUCCGUCCG AAaua uugucaucaaaaug aua   aaggggauguaucuaga    a
||||||| ||  |||| |||||     |||   ||||||||||||||| ||||| |||||||||||||| |||   |||||||||||||||||    a
uguauuu cg  uucg ucuuc     ucg   augagggaggcaggc uuuau aacaguaguuuuac uau   uuccccuacauagaucu    a
       g  -g    g     ----u   uua               c     c              c   --c                 acau 


Annotation confidence Low
Do you think this miRNA is real?
Comments
Yao et al. misname this sequence miR512 in [1]. miR1128 is unrelated to mammalian miR-512;

Genome context
Unknown

Database links

Mature tae-miR1128

Accession MIMAT0005363
Description Triticum aestivum tae-miR1128 mature miRNA
Sequence 31 - UACUACUCCCUCCGUCCGAAA - 51
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 17543110
    Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
    Genome Biol (2007) 8:R96