Stem-loop sequence tae-MIR1139

Accession

MI0006201 (change log)

Description

Triticum aestivum miR1139 stem-loop

Gene family

MIPF0000810; MIR1139

Literature search

7 open access papers mention tae-MIR1139
(12 sentences)

Stem-loop

   gccac     a       aua  c         acacauaucccuagaacuauauaacuaccuucauaguggguagcaacauaagugugguaucaugcaaagcuucauuua 
5'      agugg gaguaac   ca uaguaacau                                                                              u
        ||||| |||||||   || |||||||||                                                                               
3'      ucacc cucauug   gu aucauugua                                                                              u
   -----     -       -aa  u         gcuccucucuccaucaaacucauugaaucgaucaaugauauuguaguguacaggguuacguuauacucagauauugga 

Deep sequencing

13478 reads, 0 reads per million, 116 experiments

Confidence

Annotation confidence: low

Feedback: Do you believe this miRNA is real?

Comments

Yao et al. misname this sequence miR523 in [1]. miR1139 is unrelated to mammalian miR-523;

Genome context

• Coordinates: 6B: 157622002-157622218 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0006201

Mature sequence tae-miR1139

• Accession: MIMAT0005374
• Sequence: 11 - agaguaacauacacuaguaaca - 32
• Deep sequencing: 3848 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).