Stem-loop sequence aga-mir-1174

Accession

MI0006237 (change log)

Description

Anopheles gambiae miR-1174 stem-loop

Literature search

3 open access papers mention aga-mir-1174
(11 sentences)

Stem-loop

   -     g  -         --uu      auc     accaaggcacuuucgucacuggcauuguaaggccgagcagaugcggccucaac 
5'  gcuac au cguggguau    uagauc   gacag                                                     c
    ||||| || |||||||||    ||||||   |||||                                                     c
3'  cggug ua guacccaua    aucuag   cuguc                                                     a
   g     g  a         cuuc      --a     auaccaaccugucccgugaccugcccucgucuacgcuuggugcccacucccaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr2R: 9129499-9129675 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-1174

• aga-mir-1174: chr2R: 9129499-9129675 [+]
• aga-mir-1175: chr2R: 9129786-9129865 [+]

Database links

• miRBase Tracker:MI0006237

Mature sequence aga-miR-1174

• Accession: MIMAT0005524
• Sequence: 146 - ucagaucuacuucauacccaug - 167
• Evidence: experimental; cloned [1]

References

1. PMID:17933784 "Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion" Winter F, Edaye S, Huttenhofer A, Brunel C Nucleic Acids Res. 35:6953-6962(2007).