Stem-loop aga-mir-1175

Accession

MI0006238

Description

Anopheles gambiae aga-mir-1175 precursor miRNA

Literature search

6 open access papers mention aga-mir-1175
(9 sentences)

Sequence

82142 reads, 2065.0 reads per million, 24 experiments

gauauggaauAAGUGGAGUAGUGGUCUCAUCGCUuagcuucagaaaagUGAGAUUCUACUUCUCCGACUUAAuucauauc
((((((((.(((((((((.(((((..((.((((((..(....)..))))))))..))))).)))).))))).))))))))

Structure

        a     -    U     UC  A      ag u 
gauaugga uAAGU GGAG AGUGG  UC UCGCUu  c u
|||||||| ||||| |||| |||||  || ||||||  |  
cuauacuu AUUCA CCUC UCAUC  AG AGUgaa  g c
        A     G    U     UU  -      aa a 

Annotation confidence High

Genome context

ref|NC_064601.1|: 9041591-9041670 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aga-mir-1175

Mature aga-miR-1175-5p

• Accession: MIMAT0053026
• Description: Anopheles gambiae aga-miR-1175-5p mature miRNA
• Sequence: 11 - AAGUGGAGUAGUGGUCUCAUCGCU - 34
• Evidence: experimental ; cloned [1]

Mature aga-miR-1175-3p

• Accession: MIMAT0005525
• Description: Anopheles gambiae aga-miR-1175-3p mature miRNA
• Sequence: 49 - UGAGAUUCUACUUCUCCGACUUAA - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17933784
   Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
   "Winter F, Edaye S, Huttenhofer A, Brunel C"
   "Nucleic Acids Res (2007) 35:6953-6962