miRBase entry: aga-mir-34

Stem-loop aga-mir-34


Accession
MI0006239
Description
Anopheles gambiae aga-mir-34 precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
4 open access papers mention aga-mir-34
(8 sentences)

Sequence

gaggcaauauacgcucUGGCAGUGUGGUUAGCUGGUugugugguuuucccaucuucacagccacuauccgcccugccgucgcgcuaaugc
...(((.((..(((..((((((.((((.(((.(((((((((((.....)))....))))))))))).)))).))))))..))).)).)))

Structure
gag   a  ua   uc      U    U   C        ----   u 
   gca ua  cgc  UGGCAG GUGG UAG UGGUugug    ugg u
   ||| ||  |||  |||||| |||| ||| ||||||||    ||| u
   cgu au  gcg  gccguc cgcc auc accgacac    acc u
---   a  -c   cu      c    u   -        uucu   c 


Annotation confidence Not enough data
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Genome context
chr2R: 28232667-28232756 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aga-mir-34
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aga-miR-34

Accession MIMAT0005526
Description Anopheles gambiae aga-miR-34 mature miRNA
Sequence 17 - UGGCAGUGUGGUUAGCUGGU - 36
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17933784
    Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
    "Winter F, Edaye S, Huttenhofer A, Brunel C"
    "Nucleic Acids Res (2007) 35:6953-6962