Stem-loop xtr-mir-427-3

Accession

MI0006270

Description

Xenopus tropicalis xtr-mir-427-3 precursor miRNA

Gene family

MIPF0000441; mir-427

Literature search

1 open access papers mention xtr-mir-427-3
(1 sentences)

Sequence

agcacccaaaacggggcucucucuugugcaugaauuauggugaGAAAGUGCUUUCUGUUUUGGGCGuugu
(((.(((((((((((((.((.(((((..((((...)))).))))).)).)))..)))))))))).)))..

Structure

--   a          --   u  c     ug    a 
  agc cccaaaacgg  ggc cu ucuug  caug  
  ||| ||||||||||  ||| || |||||  |||| a
  uuG GGGUUUUGUC  UCG GA AGagu  guau  
ug   C          UU   U  A     -g    u 

Annotation confidence Not enough data

Genome context

chr3: 133222853-133222922 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-427-3

Mature xtr-miR-427

• Accession: MIMAT0005566
• Description: Xenopus tropicalis xtr-miR-427 mature miRNA
• Sequence: 44 - GAAAGUGCUUUCUGUUUUGGGCG - 66
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112