miRBase entry: mmu-mir-669k

Stem-loop mmu-mir-669k


Accession
MI0006279
Symbol
MGI: Mir669k
Description
Mus musculus mmu-mir-669k precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
11 open access papers mention mmu-mir-669k
(28 sentences)

Sequence

161 reads, 43 reads per million, 31 experiments
ucuuaugcccaccaaaaaUGUGCAUGUGUGUAUAGUUGUGUGCauauucacuucucuauaugaaUAUGCAUAUACACGCAUGCAAacacauucauaggaauggccagagcuauaucucaguuaggag
(((((((.........(((((((((((((((((......(((((((((((..........)))))))))))))))))))))))....))))))))))))(((((....)))))..(((......)))

Structure
----------------------------       cccaccaaa     ----            AGUUGU           cuuc 
                            ucuuaug         aaUGU    GCAUGUGUGUAU      GUGCauauuca    u
                            |||||||         |||||    ||||||||||||      |||||||||||     
                            aggauac         uuaca    CGUACGCACAUA      UACGUAUaagu    c
gaggauugacucuauaucgagaccggua       ---------     caAA            ------           auau 


Annotation confidence Not enough data
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Genome context
chr2: 10475300-10475426 [+]
Clustered miRNAs
29 other miRNAs are < 10 kb from mmu-mir-669k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-669k-5p

Accession MIMAT0017323
Description Mus musculus mmu-miR-669k-5p mature miRNA
Sequence 19 - UGUGCAUGUGUGUAUAGUUGUGUGC - 43
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mmu-miR-669k-3p

Accession MIMAT0005831
Description Mus musculus mmu-miR-669k-3p mature miRNA
Sequence 65 - UAUGCAUAUACACGCAUGCAA - 85
Evidence experimental
454 [1], Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102