miRBase entry: mmu-mir-669j

Stem-loop mmu-mir-669j


Accession
MI0006286
Symbol
MGI: Mir669j
Description
Mus musculus mmu-mir-669j precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
9 open access papers mention mmu-mir-669j
(12 sentences)

Sequence

51 reads, 16 reads per million, 18 experiments
agcaugcgauucaugugauguccaccaagaaugugcauguguguauaguuguguacauauucacuuuuguauaugaauaUGCAUAUACUCACAUGCAAACAuacucccacgaauggcccga
.....((.((((.((.((.((.........(((((..((((((((((.(((((((((..........))))))))).))))))))))..)))))........)))).)).)))).))....

Structure
agcau  g    a  u  u  ccaccaaga     ca          g         uauu 
     gc auuc ug ga gu         augug  uguguguaua uuguguaca    c
     || |||| || || ||         |||||  |||||||||| |||||||||     
     cg uaag ac cu ca         UACAC  AUAUACGUau aguauaugu    a
-agcc  g    c  c  -  -uACAAACG     UC          a         uuuc 


Annotation confidence Not enough data
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Genome context
chr2: 10477910-10478030 [+]
Clustered miRNAs
27 other miRNAs are < 10 kb from mmu-mir-669j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-669j

Accession MIMAT0005838
Description Mus musculus mmu-miR-669j mature miRNA
Sequence 80 - UGCAUAUACUCACAUGCAAACA - 101
Evidence experimental
454 [1]

References

  1. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102