miRBase entry: mmu-mir-669e

Stem-loop mmu-mir-669e


Accession
MI0006300
Symbol
MGI: Mir669e
Description
Mus musculus mmu-mir-669e precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
8 open access papers mention mmu-mir-669e
(11 sentences)

Sequence

454 reads, 39 reads per million, 64 experiments
gccugggauucaugggcuguacccuauauaugggcaggugugUGUCUUGUGUGUGCAUGUUCAUuuguguauaugaauaUGAAUAUACACACACUUACACacucaugcacacacacaca
(((((..((..(((((......)))))..))...))))).(((((...(((((((((((......(((((((((........)))))))))............))))))))))))))))

Structure
gccugggauucaugggcuguacccuauauaugggcaggug     CUU           ------UUCAUu         gaa 
                                        ugUGU   GUGUGUGCAUG            uguguauau   u
                                        |||||   |||||||||||            |||||||||    
                                        acaca   cacacacguac            ACACAUAUA   a
----------------------------------------     ---           ucaCACAUUCAC         AGU 


Annotation confidence High
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Genome context
chr2: 10467495-10467613 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from mmu-mir-669e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-669e-5p

Accession MIMAT0005853
Description Mus musculus mmu-miR-669e-5p mature miRNA
Sequence 43 - UGUCUUGUGUGUGCAUGUUCAU - 64
Evidence experimental
454 [1], Illumina [2]
Database links
Predicted targets

Mature mmu-miR-669e-3p

Accession MIMAT0017330
Description Mus musculus mmu-miR-669e-3p mature miRNA
Sequence 80 - UGAAUAUACACACACUUACAC - 100
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102