Stem-loop sequence mmu-mir-1195

Accession

MI0006303 (change log)

Symbol

MGI:Mir1195

Description

Mus musculus miR-1195 stem-loop

Literature search

10 open access papers mention mmu-mir-1195
(37 sentences)

Stem-loop

   ----ua        caga        a    ga   ca    ----     ac 
5'       gaggcagg    ucucugug guuc  ggc  gccu    gcuca  a
         ||||||||    |||||||| ||||  |||  ||||    |||||   
3'       cucugucc    agagacac caag  ccg  cggg    ugagu  g
   gaagaa        -caa        a    ga   -a    aucu     aa 

Deep sequencing

10278 reads, 668 reads per million, 124 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 70860503-70860600 [-]
• Overlapping transcripts:

  antisense

  OTTMUST00000104222 ; RP23-85E24.2-002; intron 3

  ENSMUST00000176549 ; Gm9320-002; intron 3

Database links

• EntrezGene:Mir1195
• MGI:Mir1195
• RNAcentral:URS000075D2D2_10090
• miRBase Tracker:MI0006303

Mature sequence mmu-miR-1195

• Accession: MIMAT0005856
• Sequence: 21 - ugaguucgaggccagccugcuca - 43
• Deep sequencing: 8620 reads, 102 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS0000023300_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1195
  • miRDB:mmu-miR-1195
  • microrna.org:mmu-miR-1195

References

1. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).