miRBase entry: hsa-mir-548j

Stem-loop hsa-mir-548j


Accession
MI0006345
Symbol
HGNC: MIR548J
Description
Homo sapiens hsa-mir-548j precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
45 open access papers mention hsa-mir-548j
(167 sentences)

Sequence

1718 reads, 35 reads per million, 58 experiments
gggcagccagugaauaguuagcuggugcAAAAGUAAUUGCGGUCUUUGGUauuacuuucaguggCAAAAACUGCAUUACUUUUGCaccagccuacuagaacgcugaguucag
((((...(((((..((((..(((((((((((((((((.(((((.((((.((((......)))).)))).))))))))))))))))))))))..))))...))))).))))..

Structure
--    agc     -aa    ua                 U     C    G    ac 
  gggc   cagug   uagu  gcuggugcAAAAGUAAU GCGGU UUUG Uauu  u
  ||||   |||||   ||||  ||||||||||||||||| ||||| |||| ||||   
  cuug   gucgc   auca  cgaccaCGUUUUCAUUA CGUCA AAAC guga  u
ga    --a     aag    uc                 -     A    g    cu 


Annotation confidence High
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Genome context
chr22: 26555212-26555323 [-]

Disease association
hsa-mir-548j is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-548j-5p

Accession MIMAT0005875
Description Homo sapiens hsa-miR-548j-5p mature miRNA
Sequence 29 - AAAAGUAAUUGCGGUCUUUGGU - 50
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature hsa-miR-548j-3p

Accession MIMAT0026737
Description Homo sapiens hsa-miR-548j-3p mature miRNA
Sequence 65 - CAAAAACUGCAUUACUUUUGC - 85
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 18285502
    Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    "Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA"
    "Genome Res (2008) 18:610-621

  2. PubMed ID: 23226537
    The repertoire and features of human platelet microRNAs
    Plé H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P
    PLoS One (2012) 7:e50746