Stem-loop sequence hsa-mir-548f-3

Accession

MI0006376 (change log)

Symbol

HGNC:MIR548F3

Description

Homo sapiens miR-548f-3 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

46 open access papers mention hsa-mir-548f-3
(146 sentences)

Stem-loop

   --                cc        a           uuu 
5'   auuagguuggugcaaa  uaauugca uuuuugcaguu   u
     ||||||||||||||||  |||||||| |||||||||||   u
3'   uaauccaaccacguuu  auuaaugu aaaaacguuaa   a
   ca                uc        c           uga 

Deep sequencing

2378 reads, 3.94 reads per million, 127 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr5: 110513829-110513915 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR548F3
• EntrezGene:MIR548F3
• HGNC:MIR548F3
• RNAcentral:URS000075B2BD_9606
• miRBase Tracker:MI0006376

Mature sequence hsa-miR-548f-3p

• Accession: MIMAT0005895
• Sequence: 54 - aaaaacuguaauuacuuuu - 72
• Deep sequencing: 9577 reads, 124 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000B7F84_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-548f-3p
  • miRDB:hsa-miR-548f-3p
  • microrna.org:hsa-miR-548f-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).