Stem-loop sequence hsa-mir-1247

Accession

MI0006382 (change log)

Symbol

HGNC:MIR1247

Description

Homo sapiens miR-1247 stem-loop

Gene family

MIPF0000669; mir-1247

Literature search

20 open access papers mention hsa-mir-1247
(147 sentences)

Stem-loop

   c    u  -    ---c  a   c  cccc   -  --c       a  c   c  uu   c     ac  ugc 
5'  cgcu gc cucg    cc gcg ag    ggc cg   ugggcgc cc guc cg  cgu cccgg  gu   u
    |||| || ||||    || ||| ||    ||| ||   ||||||| || ||| ||  ||| |||||  ||    
3'  gcgg cg gagc    gg cgc uc    ccg gu   gcccgcg gg cag gc  gca gggcc  ca   c
   -    -  a    ccca  -   u  --ca   a  caa       a  u   a  -u   a     -c  ucu 

Deep sequencing

7284 reads, 25.9 reads per million, 139 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr14: 101560287-101560422 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR1247
• HGNC:MIR1247
• RNAcentral:URS000075C329_9606
• miRBase Tracker:MI0006382

Mature sequence hsa-miR-1247-5p

• Accession: MIMAT0005899
• Previous IDs: hsa-miR-1247
• Sequence: 40 - acccgucccguucguccccgga - 61
• Deep sequencing: 6124 reads, 136 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000057DF36_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1247-5p
  • TargetScanVert:hsa-miR-1247-5p
  • miRDB:hsa-miR-1247-5p
  • microrna.org:hsa-miR-1247-5p

Mature sequence hsa-miR-1247-3p

• Accession: MIMAT0022721
• Sequence: 74 - ccccgggaacgucgagacuggagc - 97
• Deep sequencing: 1079 reads, 109 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000032835F_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1247-3p
  • TargetScanVert:hsa-miR-1247-3p
  • miRDB:hsa-miR-1247-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).