Stem-loop sequence hsa-mir-1306

Accession

MI0006443 (change log)

Symbol

HGNC:MIR1306

Description

Homo sapiens miR-1306 stem-loop

Gene family

MIPF0000531; mir-1306

Literature search

13 open access papers mention hsa-mir-1306
(54 sentences)

Stem-loop

   g  ag a    -c       uccccu  a        gugg   a 
5'  ug  c gucu  caccacc      gc aacgucca    ugc g
    ||  | ||||  |||||||      || ||||||||    |||  
3'  gc  g cagg  guggugg      cg uugcaggu    aug a
   a  cu a    ua       ---ucu  g        ---a   g 

Deep sequencing

6511 reads, 6.45 reads per million, 155 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr22: 20086058-20086142 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000318660 ; DGCR8-007; intron 1

  OTTHUMT00000318657 ; DGCR8-004; intron 6

  OTTHUMT00000318655 ; DGCR8-002; intron 7

  OTTHUMT00000318656 ; DGCR8-003; intron 7

  OTTHUMT00000318654 ; DGCR8-001; intron 9

  ENST00000491892 ; DGCR8-007; intron 1

  ENST00000498171 ; DGCR8-004; intron 6

  ENST00000495826 ; DGCR8-002; intron 7

  ENST00000407755 ; DGCR8-003; intron 7

  ENST00000383024 ; DGCR8-201; intron 8

  ENST00000351989 ; DGCR8-001; intron 9

Clustered miRNAs

< 10kb from hsa-mir-1306

• hsa-mir-3618: chr22: 20085746-20085833 [+]
• hsa-mir-1306: chr22: 20086058-20086142 [+]

Database links

• EntrezGene:MIR1306
• HGNC:MIR1306
• RNAcentral:URS000075B769_9606
• miRBase Tracker:MI0006443

Mature sequence hsa-miR-1306-5p

• Accession: MIMAT0022726
• Sequence: 15 - ccaccuccccugcaaacgucca - 36
• Deep sequencing: 4159 reads, 152 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000500449_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1306-5p
  • TargetScanVert:hsa-miR-1306-5p
  • miRDB:hsa-miR-1306-5p

Mature sequence hsa-miR-1306-3p

• Accession: MIMAT0005950
• Previous IDs: hsa-miR-1306
• Sequence: 55 - acguuggcucugguggug - 72
• Deep sequencing: 2325 reads, 120 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000041E780_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1306-3p
  • TargetScanVert:hsa-miR-1306-3p
  • miRDB:hsa-miR-1306-3p
  • microrna.org:hsa-miR-1306-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).