Stem-loop bna-MIR169b

Accession

MI0006458

Description

Brassica napus bna-MIR169b precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

11 open access papers mention bna-MIR169b
(44 sentences)

Sequence

gugaccaaaguagugugCAGCCAAGGAUGACUUGCCGAuuugaaauauauuuuuaauacuuuacuaagacaucuuuucaguuucaaauuugucuuggagaggcuaggaagaaauuacaauuuauuucguaguuuaaagaaaaaauaugaucggcaaguuuuccuuggcuacauguuucuuugugucgc
((((((((((.((((((.(((((((((.((((((((((((......((((((((....((((.((((((((..(((........)))..))))))))))))((((.((((((((....)))).)))).)))).......)))))))))))))))))))).))))))))).)))))).))))).)))))

Structure

     -     u      C         U            ugaaau        ----------------------------------aaua    a        uc   uca 
gugac caaag agugug AGCCAAGGA GACUUGCCGAuu      auauuuuu                                      cuuu cuaagaca  uuu   g
||||| ||||| |||||| ||||||||| ||||||||||||      ||||||||                                      |||| ||||||||  |||    
cgcug guuuc uuguac ucgguuccu uugaacggcuag      uauaaaaa                                      gaga gguucugu  aaa   u
     u     u      a         u            ------        agaaauuugaugcuuuauuuaacauuaaagaaggaucg    -        uu   cuu 

Annotation confidence Not enough data

Genome context

EM:AC189369: 1537-1724 [-]

Mature bna-miR169b

• Accession: MIMAT0005613
• Description: Brassica napus bna-miR169b mature miRNA
• Sequence: 18 - CAGCCAAGGAUGACUUGCCGA - 38
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823