Stem-loop vvi-MIR156c

Accession

MI0006487

Description

Vitis vinifera vvi-MIR156c precursor miRNA

Literature search

11 open access papers mention vvi-MIR156c
(96 sentences)

Sequence

699875 reads, 1906.0 reads per million, 222 experiments

aaggaauaggUGACAGAAGAGAGUGAGCACacauggucuguucuugcauggguccaugcuugaagcucugcguGCUCACUCUCUAUCUGUCAUCUGuccucucu
.((((.((((((((((((((((((((((((.((.(((...(((..(((((....)))))..)))))).)).))))))))))))).)))))))))))))))....

Structure

---a    a           -             a  u   cug   uu     g 
    agga uaggUGACAGA AGAGAGUGAGCAC ca ggu   uuc  gcaug g
    |||| ||||||||||| ||||||||||||| || |||   |||  |||||  
    uccu GUCUACUGUCU UCUCUCACUCGug gu ucg   aag  cguac u
ucuc    -           A             c  c   ---   uu     c 

Annotation confidence High

Genome context

gb|CP126651.1|: 856474-856577 [-]

Mature vvi-miR156c-5p

• Accession: MIMAT0005642
• Description: Vitis vinifera vvi-miR156c-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [2]

Mature vvi-miR156c-3p

• Accession: MIMAT0055779
• Description: Vitis vinifera vvi-miR156c-3p mature miRNA
• Sequence: 74 - GCUCACUCUCUAUCUGUCAUCUG - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558