miRBase entry: 19939267

High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera

PubMed ID 19939267
Authors Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
Journal BMC Genomics
Volume 10
Pages 558

There are 137 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
vvi-MIR156a MI0006485 1556 chr19 8708913 8709016 - -
vvi-MIR156b MI0006486 26501 chr4 5356999 5357100 - -
vvi-MIR156c MI0006487 26109 chr4 848204 848307 - -
vvi-MIR156d MI0006488 26724 chr11 7623217 7623319 - -
vvi-MIR156f MI0006490 459071 chr14 26463671 26463775 + -
vvi-MIR156g MI0006491 459070 chr17 3046324 3046426 - -
vvi-MIR156i MI0006492 459067 chr14 19727077 19727179 - -
vvi-MIR159a MI0006493 0 chr15 18469173 18469366 - -
vvi-MIR159b MI0006494 0 chr15 18471875 18472059 - -
vvi-MIR159c MI0006495 1256 chr17 2609205 2609394 - -
vvi-MIR160a MI0006496 5 chr12 10147157 10147259 - -
vvi-MIR160b MI0006497 2 chr10 1222379 1222482 + -
vvi-MIR160c MI0006498 12 chr10 11745661 11745766 + -
vvi-MIR160d MI0006499 11 chr8 13017021 13017122 + -
vvi-MIR160e MI0006501 92 None None -
vvi-MIR162 MI0006502 539 chr17 4716519 4716621 + -
vvi-MIR164a MI0006503 6785 chr7 3287470 3287590 - -
vvi-MIR164b MI0006504 3 chr9 514758 514850 - -
vvi-MIR164c MI0006505 6785 chr8 10080460 10080556 + -
vvi-MIR164d MI0006506 6786 chr14 1414565 1414682 - -
vvi-MIR166a MI0006507 154715 chr8 3302797 3302926 - -
vvi-MIR166b MI0006508 147294 chr12 17937398 17937496 + -
vvi-MIR166c MI0006509 147510 chr15 16978572 16978731 - -
vvi-MIR166d MI0006510 147335 chr16 21405216 21405375 - High
vvi-MIR166e MI0006511 147511 chr2 2255722 2255887 + -
vvi-MIR166f MI0006512 148420 chr7 19450014 19450113 + -
vvi-MIR166g MI0006513 148377 chr7 453858 453957 - -
vvi-MIR166h MI0006514 154729 chr5 6741188 6741287 - -
vvi-MIR167a MI0006515 65191 chr1 1618504 1618854 + -
vvi-MIR167b MI0006516 65519 chr14 7137388 7137486 + -
vvi-MIR167c MI0006517 65185 NW_003724203.1 260014 260104 + -
vvi-MIR167d MI0006518 64722 NW_003724203.1 254821 254935 + -
vvi-MIR167e MI0006519 65414 chr5 5845385 5845474 + -
vvi-MIR168 MI0006520 15147 chr2 17944801 17944932 - -
vvi-MIR169a MI0006521 250 chr11 16112972 16113095 + -
vvi-MIR169y MI0006522 0 chr1 22233573 22233820 + -
vvi-MIR169c MI0006523 253 chr4 2265925 2266014 - -
vvi-MIR169e MI0006525 33 chr14 25082717 25082865 - High
vvi-MIR169f MI0006526 245 chr1 12404208 12404391 + -
vvi-MIR169g MI0006527 270 chr8 21104451 21104571 + -
vvi-MIR169j MI0006528 251 chr11 16101917 16102038 + -
vvi-MIR169k MI0006529 251 chr11 16108539 16108660 + -
vvi-MIR169m MI0006530 135 chr11 16361236 16361337 + -
vvi-MIR169p MI0006531 134 chr11 16347810 16347911 + -
vvi-MIR169r MI0006532 13 chr11 16415131 16415239 + -
vvi-MIR169s MI0006533 248 chr11 16439712 16439810 + -
vvi-MIR169t MI0006534 9 chr11 16399567 16399676 + -
vvi-MIR169u MI0006535 11 chr11 16409401 16409510 + -
vvi-MIR171a MI0006536 64 chr14 25491201 25491299 - -
vvi-MIR171b MI0006537 63 chr12 5542399 5542497 - -
vvi-MIR171c MI0006538 97 chr12 5487747 5487849 - -
vvi-MIR171d MI0006539 70 chr10 962566 962665 + -
vvi-MIR171e MI0006540 7 chr11 5203318 5203420 + -
vvi-MIR171f MI0006541 8 chr9 7012498 7012600 + -
vvi-MIR171h MI0006542 4 chr17 1828653 1828748 - -
vvi-MIR171i MI0006543 65 chr17 893534 893636 + -
vvi-MIR172c MI0006546 1 chr13 3217507 3217644 + -
vvi-MIR172d MI0006547 123 chr8 12667173 12667281 + -
vvi-MIR319b MI0006548 6 chr1 4189562 4189755 + -
vvi-MIR319c MI0006549 425 chr2 855561 855742 - -
vvi-MIR319f MI0006550 146 chr6 9137255 9137447 + -
vvi-MIR319g MI0006551 3 chr17 3675978 3676199 - -
vvi-MIR390 MI0006552 1062 chr6 8159519 8159658 + -
vvi-MIR393b MI0006553 4 chr13 4265132 4265214 + -
vvi-MIR394a MI0006554 3 chr12 17122004 17122092 - -
vvi-MIR395a MI0006556 475 chr1 6527928 6528019 + -
vvi-MIR395b MI0006557 475 chr1 6502664 6502753 + -
vvi-MIR395c MI0006558 479 chr1 6499914 6500005 - -
vvi-MIR395d MI0006559 475 chr1 6512763 6512848 + -
vvi-MIR395e MI0006560 479 chr1 6505248 6505339 + -
vvi-MIR395f MI0006561 475 chr1 6489542 6489627 + -
vvi-MIR395g MI0006562 476 chr1 6482113 6482198 + -
vvi-MIR395h MI0006563 479 chr1 6566652 6566743 + -
vvi-MIR395i MI0006564 476 chr1 6562642 6562727 + -
vvi-MIR395j MI0006565 476 chr1 6553026 6553111 + -
vvi-MIR395k MI0006566 479 chr1 6536780 6536871 + -
vvi-MIR395l MI0006567 476 chr1 6559098 6559184 + -
vvi-MIR395m MI0006568 475 chr1 6557811 6557902 + -
vvi-MIR396a MI0006569 357 chr9 7372522 7372637 - -
vvi-MIR396b MI0006570 357 chr11 5246790 5246897 + -
vvi-MIR396d MI0006571 345 chr11 5253110 5253229 - -
vvi-MIR398a MI0006572 8 chr1 731608 731710 + -
vvi-MIR399a MI0006573 3 chr10 2989450 2989546 + -
vvi-MIR399b MI0006574 6 chr16 15618708 15618824 - -
vvi-MIR399g MI0006576 3 chr10 2981247 2981359 - -
vvi-MIR399h MI0006577 2 chr10 2983545 2983634 + -
vvi-MIR408 MI0006578 4222 chr7 5011935 5012041 + -
vvi-MIR479 MI0006579 1190 chr16 21573759 21573852 + -
vvi-MIR535a MI0006580 114432 chr7 433583 433683 - -
vvi-MIR535b MI0006581 114432 NW_003724313.1 7083 7183 - -
vvi-MIR535c MI0006583 114437 None None -
vvi-MIR169b MI0007940 4 chr11 16265437 16265541 + -
vvi-MIR169h MI0007941 4 chr11 16151651 16151751 + -
vvi-MIR169i MI0007942 0 chr11 16158014 16158118 + -
vvi-MIR169l MI0007943 86 chr11 16185290 16185392 + -
vvi-MIR169n MI0007944 251 chr11 16380240 16380340 + -
vvi-MIR169o MI0007945 86 chr11 16190330 16190432 + -
vvi-MIR169q MI0007946 25 chr11 16384484 16384580 + -
vvi-MIR169v MI0007947 103 chr11 16468025 16468120 + -
vvi-MIR169w MI0007948 246 chr14 29685614 29685756 + -
vvi-MIR169x MI0007949 19 chr17 355713 355837 - -
vvi-MIR171g MI0007950 0 chr18 3255625 3255700 + -
vvi-MIR319e MI0007951 3 chr11 4317224 4317330 + -
vvi-MIR393a MI0007952 1 chr16 17247187 17247312 - -
vvi-MIR394c MI0007953 4 chr18 3551260 3551361 - -
vvi-MIR395n MI0007954 0 chr17 6408995 6409131 - -
vvi-MIR396c MI0007955 332 chr4 5119591 5119698 - -
vvi-MIR397a MI0007956 472 NW_003724218.1 139445 139562 - -
vvi-MIR398b MI0007958 27 chr6 16503544 16503631 - -
vvi-MIR398c MI0007959 27 chr6 15575581 15575668 + -
vvi-MIR399c MI0007960 4 chr15 15232200 15232281 + -
vvi-MIR399i MI0007963 12 chr2 4101801 4101922 + -
vvi-MIR403a MI0007964 21 chr5 65247 65361 + -
vvi-MIR403b MI0007965 22 chr5 600181 600266 + -
vvi-MIR403c MI0007966 21 chr5 602611 602725 + -
vvi-MIR403d MI0007967 22 chr5 166482 166567 + -
vvi-MIR403e MI0007968 21 chr5 168099 168213 + -
vvi-MIR403f MI0007969 21 chr7 4179673 4179780 - -
vvi-MIR477a MI0007970 6 chr1 22740261 22740354 + -
vvi-MIR482 MI0007971 1000 chr17 5523024 5523140 + -
vvi-MIR171j MI0031743 70 NW_003725262.1 486 585 - -
vvi-MIR156e MI0006489 5 chr11 1504194 1504301 - -
vvi-MIR169d MI0006524 604 chr11 16106486 16106605 + -
vvi-MIR172a MI0006544 0 chr6 17652412 17652521 + -
vvi-MIR172b MI0006545 0 chr13 6181370 6181487 + -
vvi-MIR394b MI0006555 2 chr18 1413038 1413130 - -
vvi-MIR399e MI0006575 3 chr10 2992220 2992331 - -
vvi-MIR156h MI0007939 9 chr12 4108571 4108798 + -
vvi-MIR399d MI0007961 0 chr10 2988021 2988125 - -
vvi-MIR399f MI0007962 None chr10 2995807 2995913 - -
vvi-MIR828a MI0007972 6 chr16 21724308 21724429 + -
vvi-MIR845a MI0007974 18 chr16 20504749 20505190 + -
vvi-MIR845b MI0007975 18 chr2 12264843 12265284 + -
vvi-MIR845c MI0007976 0 chr7 207778 207867 - -
vvi-MIR845d MI0007977 0 chr4 9870404 9870534 - -
vvi-MIR845e MI0007978 0 chr5 13374677 13374807 + -
vvi-MIR477b MI0016025 4 chr2 1237689 1237805 + -



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