Stem-loop vvi-MIR171f

Accession

MI0006541

Description

Vitis vinifera vvi-MIR171f precursor miRNA

Literature search

5 open access papers mention vvi-MIR171f
(16 sentences)

Sequence

37888 reads, 535.0 reads per million, 185 experiments

uugaagaaagCGAUGUUGGUGAGGUUCAAUCugaagauugauuuaugcuugaauguaaaaacugaucucagaUUGAGCCGCGCCAAUAUCACUuuucuguggc
.....(((((.((((((((((.((((((((((((.(((((.(((.(((......))).))).))))))))))))))))).)))))))))).))))).......

Structure

--uugaa     C          A            a     a   a   uu 
       gaaag GAUGUUGGUG GGUUCAAUCuga gauug uuu ugc  g
       ||||| |||||||||| |||||||||||| ||||| ||| |||   
       uuuUC CUAUAACCGC CCGAGUUagacu cuagu aaa aug  a
cgguguc     A          G            -     c   a   ua 

Annotation confidence High

Genome context

gb|CP126656.1|: 6966784-6966886 [+]

Mature vvi-miR171f-5p

• Accession: MIMAT0055825
• Description: Vitis vinifera vvi-miR171f-5p mature miRNA
• Sequence: 11 - CGAUGUUGGUGAGGUUCAAUC - 31
• Evidence: experimental ; unknown

Mature vvi-miR171f-3p

• Accession: MIMAT0005696
• Description: Vitis vinifera vvi-miR171f-3p mature miRNA
• Sequence: 73 - UUGAGCCGCGCCAAUAUCACU - 93
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558