Stem-loop vvi-MIR403d

Accession

MI0007967

Description

Vitis vinifera vvi-MIR403d precursor miRNA

Literature search

3 open access papers mention vvi-MIR403d
(6 sentences)

Sequence

1477980 reads, 7519.0 reads per million, 226 experiments

acaaaccucgAGUUUGUGCGCGAAUCCAACCccucaaucuucuuucaaaggggugUUAGAUUCACGCACAAACUCGggaucugucu
......((((((((((((((.(((((..((((((..............))))))....))))).))))))))))))))........

Structure

--acaaac              C     --CA      caaucu 
        cucgAGUUUGUGCG GAAUC    ACCccu      u
        |||||||||||||| |||||    ||||||       
        ggGCUCAAACACGC CUUAG    ugggga      c
ucugucua              A     AUUg      aacuuu 

Annotation confidence Medium

Genome context

gb|CP126652.1|: 1752010-1752095 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR403d

Mature vvi-miR403d-5p

• Accession: MIMAT0055890
• Description: Vitis vinifera vvi-miR403d-5p mature miRNA
• Sequence: 11 - AGUUUGUGCGCGAAUCCAACC - 31
• Evidence: experimental ; unknown

Mature vvi-miR403d-3p

• Accession: MIMAT0006572
• Description: Vitis vinifera vvi-miR403d-3p mature miRNA
• Sequence: 56 - UUAGAUUCACGCACAAACUCG - 76
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558