Stem-loop vvi-MIR156d

Accession

MI0006488

Description

Vitis vinifera vvi-MIR156d precursor miRNA

Literature search

12 open access papers mention vvi-MIR156d
(95 sentences)

Sequence

919014 reads, 2594.0 reads per million, 226 experiments

agagagagacUGACAGAAGAGAGUGAGCACaugcaggcaauuuguauaaggguauaccuaugccggugcgUGCUCACCUCUCUUUCUGUCAGCuucaggugcu
.....(((.(((((((((((((((((((((.(((.((((....(((((....)))))...)))).))).))))))).))))).))))))))).))).......

Structure

--agaga   a         -     -       a   a    auuu     a 
       gag cUGACAGAA GAGAG UGAGCAC ugc ggca    guaua g
       ||| ||||||||| ||||| ||||||| ||| ||||    |||||  
       cuu GACUGUCUU CUCUC ACUCGUg gug ccgu    cauau g
ucgugga   C         U     C       c   g    -auc     g 

Annotation confidence High

Genome context

gb|CP126658.1|: 7801624-7801726 [-]

Mature vvi-miR156d-5p

• Accession: MIMAT0005643
• Description: Vitis vinifera vvi-miR156d-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [2]

Mature vvi-miR156d-3p

• Accession: MIMAT0055780
• Description: Vitis vinifera vvi-miR156d-3p mature miRNA
• Sequence: 71 - UGCUCACCUCUCUUUCUGUCAGC - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558