Stem-loop vvi-MIR167c

Accession

MI0006517

Description

Vitis vinifera vvi-MIR167c precursor miRNA

Literature search

7 open access papers mention vvi-MIR167c
(12 sentences)

Sequence

2931130 reads, 5613.0 reads per million, 219 experiments

caguagcaguUGAAGCUGCCAGCAUGAUCUCaacuucccuauacaagucaaggaaagaucaGAUCAUGUGGUAGCCUCACCuguugauggg
((.((((((.(((.(((((((.((((((((...(((.(((..........))).)))...))))))))))))))).))).)))))).))..

Structure

--  g      u   A       G        Caa   c   auac 
  ca uagcag UGA GCUGCCA CAUGAUCU   cuu ccu    a
  || |||||| ||| ||||||| ||||||||   ||| |||     
  gu guuguC ACU CGAUGGU GUACUAGa   gaa gga    a
gg  a      C   C       -        cua   a   acug 

Annotation confidence High

Genome context

gb|CP126654.1|: 839028-839118 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR167c

Mature vvi-miR167c-5p

• Accession: MIMAT0005672
• Description: Vitis vinifera vvi-miR167c-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUC - 31
• Evidence: experimental ; Array [2]

Mature vvi-miR167c-3p

• Accession: MIMAT0055802
• Description: Vitis vinifera vvi-miR167c-3p mature miRNA
• Sequence: 62 - GAUCAUGUGGUAGCCUCACC - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558