Stem-loop vvi-MIR845c

Accession

MI0007976

Description

Vitis vinifera vvi-MIR845c precursor miRNA

Literature search

4 open access papers mention vvi-MIR845c
(7 sentences)

Sequence

520 reads, 6.0 reads per million, 105 experiments

caauuauguguuuugguugucugaguuucauguuggcaauuucuuaaugauuaaacaugAGGCUCUGAUACCAAUUGAUGcauaaaccau
...((((((((((((((.(((.((((((((((((....(((....))).....)))))))))))).))))))))..))))))))).....

Structure

--caa         --     u   u            -ggca   u 
     uuauguguu  uuggu guc gaguuucauguu     auu c
     |||||||||  ||||| ||| ||||||||||||     |||  
     aauacGUAG  AACCA UAG CUCGGAguacaa     uaa u
uacca         UU     -   U            auuag   u 

Annotation confidence Not enough data

Genome context

gb|CP126654.1|: 500028-500117 [+]

Mature vvi-miR845c-3p

• Accession: MIMAT0006581
• Description: Vitis vinifera vvi-miR845c-3p mature miRNA
• Sequence: 60 - AGGCUCUGAUACCAAUUGAUG - 80
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467