Stem-loop vvi-MIR396a

Accession

MI0006569

Description

Vitis vinifera vvi-MIR396a precursor miRNA

Literature search

7 open access papers mention vvi-MIR396a
(28 sentences)

Sequence

5340 reads, 357 reads per million, 2 experiments

uccugucaugcuuUUCCACAGCUUUCUUGAACUAcuuuuccaucuaccuguuugaugaucuucuucauaaggagugugaaauagaagcucaagaaagcugugggaggacauggcaa
...(((((((.(((((((((((((((((((.((.((((((((.((.(((...(((.((...)).)))..))))))).)))).)).)).))))))))))))))))))).))))))).

Structure

ucc       c                   A  A  -    -  u  a   guu   u  u 
   ugucaug uuUUCCACAGCUUUCUUGA CU cu uuuc ca cu ccu   uga ga  
   ||||||| ||||||||||||||||||| || || |||| || || |||   ||| || c
   acgguac ggagggugucgaaagaacu ga ga aaag gu ga gga   acu cu  
--a       a                   c  a  u    u  -  -   -au   u  u 

Annotation confidence Not enough data

Genome context

chr9: 7372522-7372637 [-]

Mature vvi-miR396a

• Accession: MIMAT0005724
• Description: Vitis vinifera vvi-miR396a mature miRNA
• Sequence: 14 - UUCCACAGCUUUCUUGAACUA - 34
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558