Stem-loop vvi-MIR396a

Accession

MI0006569

Description

Vitis vinifera vvi-MIR396a precursor miRNA

Literature search

7 open access papers mention vvi-MIR396a
(29 sentences)

Sequence

2216810 reads, 10684.0 reads per million, 226 experiments

uccugucaugcuuUUCCACAGCUUUCUUGAACUAcuuuuccaucuaccuguuugaugaucuucuucauaaggagugugaaauagaaGCUCAAGAAAGCUGUGGGAGGAcauggcaa
...(((((((.(((((((((((((((((((.((.((((((((.((.(((...(((.((...)).)))..))))))).)))).)).)).))))))))))))))))))).))))))).

Structure

ucc       c                   A  A  -    -  u  a   guu   u  u 
   ugucaug uuUUCCACAGCUUUCUUGA CU cu uuuc ca cu ccu   uga ga  
   ||||||| ||||||||||||||||||| || || |||| || || |||   ||| || c
   acgguac GGAGGGUGUCGAAAGAACU Ga ga aaag gu ga gga   acu cu  
--a       A                   C  a  u    u  -  -   -au   u  u 

Annotation confidence Medium

Genome context

gb|CP126656.1|: 7324172-7324287 [-]

Mature vvi-miR396a-5p

• Accession: MIMAT0005724
• Description: Vitis vinifera vvi-miR396a-5p mature miRNA
• Sequence: 14 - UUCCACAGCUUUCUUGAACUA - 34
• Evidence: experimental ; Array [2]

Mature vvi-miR396a-3p

• Accession: MIMAT0055852
• Description: Vitis vinifera vvi-miR396a-3p mature miRNA
• Sequence: 87 - GCUCAAGAAAGCUGUGGGAGGA - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558