Stem-loop vvi-MIR169p

Accession

MI0006531

Description

Vitis vinifera vvi-MIR169p precursor miRNA

Literature search

8 open access papers mention vvi-MIR169p
(15 sentences)

Sequence

26321 reads, 161.0 reads per million, 181 experiments

aguguggaauuGAGCCAAGGAUGACUUGCCGGcagcugcagcaaggcauuaagguuuaacuggcuauaacugGCAAGCAUCCGAGGCUCUGUuucacccucu
((.(((((((.(((((..(((((.((((((((.(((..(((..((((......))))..))))))....)))))))))))))..))))).))))))).))..

Structure

--  u       u     AA     A        ---c   ug   ca    au 
  ag guggaau GAGCC  GGAUG CUUGCCGG    agc  cag  aggc  u
  || ||||||| |||||  ||||| ||||||||    |||  |||  ||||   
  uc cacuuUG CUCGG  CCUAC GAACGguc    ucg  guc  uuug  a
uc  c       U     AG     -        aaua   --   aa    ga 

Annotation confidence High

Genome context

gb|CP126658.1|: 16598136-16598237 [+]

Mature vvi-miR169p-5p

• Accession: MIMAT0005686
• Description: Vitis vinifera vvi-miR169p-5p mature miRNA
• Sequence: 12 - GAGCCAAGGAUGACUUGCCGG - 32
• Evidence: experimental ; Array [2]

Mature vvi-miR169p-3p

• Accession: MIMAT0055815
• Description: Vitis vinifera vvi-miR169p-3p mature miRNA
• Sequence: 73 - GCAAGCAUCCGAGGCUCUGU - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558