Stem-loop vvi-MIR403c

Accession

MI0007966

Description

Vitis vinifera vvi-MIR403c precursor miRNA

Literature search

3 open access papers mention vvi-MIR403c
(6 sentences)

Sequence

2329708 reads, 12834.0 reads per million, 226 experiments

gcacaucucaAGUUUGUGCGUGAAUCAAACCccaucguagccguccauaucuucggguacuaaucacggggcgauucgacgccgUUAGAUUCACGCACAAACUCGugaucugucc
(((.(((.(.((((((((((((((((.(((......(((.(((..........))).))).........((((......))))))).)))))))))))))))).).))).)))..

Structure

--   c   u a                A   -----------------Cccauc   g   ucca 
  gca auc c AGUUUGUGCGUGAAUC AAC                       gua ccg    u
  ||| ||| | |||||||||||||||| |||                       ||| |||     
  ugu uag G UCAAACACGCACUUAG UUg                       cau ggc    a
cc   c   u C                A   ccgcagcuuagcggggcacuaau   g   uucu 

Annotation confidence Medium

Genome context

gb|CP126652.1|: 1314727-1314841 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR403c

Mature vvi-miR403c-5p

• Accession: MIMAT0055889
• Description: Vitis vinifera vvi-miR403c-5p mature miRNA
• Sequence: 11 - AGUUUGUGCGUGAAUCAAACC - 31
• Evidence: experimental ; unknown

Mature vvi-miR403c-3p

• Accession: MIMAT0006571
• Description: Vitis vinifera vvi-miR403c-3p mature miRNA
• Sequence: 85 - UUAGAUUCACGCACAAACUCG - 105
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558