Stem-loop vvi-MIR395d

Accession

MI0006559

Description

Vitis vinifera vvi-MIR395d precursor miRNA

Literature search

6 open access papers mention vvi-MIR395d
(23 sentences)

Sequence

330973 reads, 1936.0 reads per million, 201 experiments

gcccccuagaGUUCCCCUGACCACUUCAuuggggaucuucucuaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcuggugucau
....((..((((((((((((.(((((((.((((((((.........)).)))))).))))))).))))))))))))..))......

Structure

--gccc  ua            C       u      -  uuc 
      cc  gaGUUCCCCUGA CACUUCA ugggga uc   u
      ||  |||||||||||| ||||||| |||||| ||   c
      gg  CUCAAGGGGGUU GUGAAGU auccuu ag   u
uacugu  uc            U       C      c  uaa 

Annotation confidence High

Genome context

gb|CP126648.1|: 6472061-6472146 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from vvi-MIR395d

Mature vvi-miR395d-5p

• Accession: MIMAT0055842
• Description: Vitis vinifera vvi-miR395d-5p mature miRNA
• Sequence: 11 - GUUCCCCUGACCACUUCA - 28
• Evidence: experimental ; unknown

Mature vvi-miR395d-3p

• Accession: MIMAT0005714
• Description: Vitis vinifera vvi-miR395d-3p mature miRNA
• Sequence: 56 - CUGAAGUGUUUGGGGGAACUC - 76
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558