Stem-loop vvi-MIR169h

Accession

MI0007941

Description

Vitis vinifera vvi-MIR169h precursor miRNA

Literature search

8 open access papers mention vvi-MIR169h
(15 sentences)

Sequence

13431 reads, 159.0 reads per million, 90 experiments

aggguggaauUGAGCCAAGGAUGGCUUGCCGUccuuugucacuauuugaggcauuaacuggucacgcaCGGAGGGUUAUCCUUGACUCCUuuagcuccucu
.((((.(((..(((.((((((((((((.((((....(((.((((.((((....)))).)))).))).)))).)))))))))))).))).))).))))....

Structure

---a    g   uU   C            G    ccuu   c    u    g 
    gggu gaa  GAG CAAGGAUGGCUU CCGU    ugu acua uuga g
    |||| |||  ||| |||||||||||| ||||    ||| |||| ||||  
    cucg uuU  CUC GUUCCUAUUGGG GGCa    gca uggu aauu c
ucuc    a   -C   A            A    ---c   c    c    a 

Annotation confidence High

Genome context

gb|CP126658.1|: 16402329-16402429 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169h

Mature vvi-miR169h-5p

• Accession: MIMAT0006546
• Description: Vitis vinifera vvi-miR169h-5p mature miRNA
• Sequence: 11 - UGAGCCAAGGAUGGCUUGCCGU - 32
• Evidence: experimental ; Array [2]

Mature vvi-miR169h-3p

• Accession: MIMAT0055867
• Description: Vitis vinifera vvi-miR169h-3p mature miRNA
• Sequence: 69 - CGGAGGGUUAUCCUUGACUCCU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558