Stem-loop vvi-MIR403f

Accession

MI0007969

Description

Vitis vinifera vvi-MIR403f precursor miRNA

Literature search

2 open access papers mention vvi-MIR403f
(5 sentences)

Sequence

309 reads, 21 reads per million, 2 experiments

ugagaugaggaguuugugcgugacucuaaaaccgccugaucuaaaccuuuucccgaugcgauaccuuuucuauggucUUAGAUUCACGCACAAACUCGuaaucugucu
..((((.(.((((((((((((((.(((((.((((...((.............................))..)))).))))).)))))))))))))).).))))....

Structure

--ug    g g              c     a    ccu  ucuaaaccuuuuc 
    agau a gaguuugugcguga ucuaa accg   ga             c
    |||| | |||||||||||||| ||||| ||||   ||             c
    ucua u CUCAAACACGCACU AGAUU uggu   cu             g
ucug    a G              U     c    -au  uuuccauagcgua 

Annotation confidence Not enough data

Genome context

chr7: 4179673-4179780 [-]

Mature vvi-miR403f

• Accession: MIMAT0006574
• Description: Vitis vinifera vvi-miR403f mature miRNA
• Sequence: 78 - UUAGAUUCACGCACAAACUCG - 98
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558