Stem-loop vvi-MIR168

Accession

MI0006520

Description

Vitis vinifera vvi-MIR168 precursor miRNA

Literature search

7 open access papers mention vvi-MIR168
(43 sentences)

Sequence

1476599 reads, 5017.0 reads per million, 226 experiments

ggucucuaauUCGCUUGGUGCAGGUCGGGAAccgacuucgccgcuccggcagcgccggaggcacgcggcggccuacgauugguugcugagcgaauuccgauCCCGCCUUGCAUCAACUGAAUcggagacggc
.((((((.(((((.((((((((((.(((((.(.((.(((((..(((((((...))))))).....((((((((.......)))))))).))))).)).).))))).)))))))))).))))).))))))...

Structure

--g      a     C          U     A c  c     cgcuccggcagcgccggaggcacg        ua 
   gucucu auUCG UUGGUGCAGG CGGGA c ga uucgc                        cggcggcc  c
   |||||| ||||| |||||||||| ||||| | || |||||                        ||||||||  g
   cagagg UAAGU AACUACGUUC GCCCu g cu aagcg                        gucguugg  a
cgg      c     C          C     a c  u     -----------------------a        uu 

Annotation confidence High

Genome context

gb|CP126649.1|: 20000812-20000943 [-]

Mature vvi-miR168-5p

• Accession: MIMAT0005675
• Description: Vitis vinifera vvi-miR168-5p mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAA - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR168-3p

• Accession: MIMAT0055805
• Description: Vitis vinifera vvi-miR168-3p mature miRNA
• Sequence: 102 - CCCGCCUUGCAUCAACUGAAU - 122
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558