Stem-loop vvi-MIR172c

Accession

MI0006546

Description

Vitis vinifera vvi-MIR172c precursor miRNA

Literature search

10 open access papers mention vvi-MIR172c
(38 sentences)

Sequence

53180 reads, 979.0 reads per million, 183 experiments

guuugcggauGGAGCAUCAUCAAGAUUCACAAguauugagacucagugcgugguggugauggugacuuuuguggucccuuccuacacuccgauggcucuuugaugugGGAAUCUUGAUGAUGCUGCAGcggcaauaaa
..((((.(.((.((((((((((((((((.((......((((.(((.((.(.(((((.((.((.((((.....)))))).)))))).).))).))).)))).....)).)))))))))))))))).)).).))))....

Structure

--gu    g a  G                A  Aguauu    c   g  c u -    u  u  u    u 
    uugc g uG AGCAUCAUCAAGAUUC CA      gaga uca ug g g gugg ga gg gacu u
    |||| | || |||||||||||||||| ||      |||| ||| || | | |||| || || |||| u
    aacg c AC UCGUAGUAGUUCUAAG gu      uucu ggu gc c c cauc cu cc cugg g
aaau    g G  G                G  -guagu    c   a  - u a    -  u  -    u 

Annotation confidence High

Genome context

gb|CP126660.1|: 3305310-3305447 [+]

Mature vvi-miR172c-5p

• Accession: MIMAT0055829
• Description: Vitis vinifera vvi-miR172c-5p mature miRNA
• Sequence: 11 - GGAGCAUCAUCAAGAUUCACAA - 32
• Evidence: experimental ; unknown

Mature vvi-miR172c-3p

• Accession: MIMAT0005701
• Description: Vitis vinifera vvi-miR172c-3p mature miRNA
• Sequence: 108 - GGAAUCUUGAUGAUGCUGCAG - 128
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558