Stem-loop vvi-MIR172a

Accession

MI0006544

Description

Vitis vinifera vvi-MIR172a precursor miRNA

Literature search

9 open access papers mention vvi-MIR172a
(37 sentences)

Sequence

1835 reads, 0 reads per million, 2 experiments

uauugccgaugcagcaucaucaagauucucauccuugaaaaguuuggcagagauaacaucaccaccgugcauuugcaugUGAAUCUUGAUGAUGCUACAUgcgcaaacaa
..((((..(((.(((((((((((((((((((....)))......(((..((.......)).))).(((((....))))).)))))))))))))))).)))..))))....

Structure

--ua    cg   c                ucauccuugaaaaguu   ca  ga 
    uugc  aug agcaucaucaagauuc                ugg  ga  u
    ||||  ||| ||||||||||||||||                |||  ||  a
    aacg  UAC UCGUAGUAGUUCUAAG                acc  cu  a
aaca    cg   A                Uguacguuuacgugcc   -a  ac 

Annotation confidence Not enough data

Genome context

chr6: 17652412-17652521 [+]

Mature vvi-miR172a

• Accession: MIMAT0005699
• Description: Vitis vinifera vvi-miR172a mature miRNA
• Sequence: 80 - UGAAUCUUGAUGAUGCUACAU - 100
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467