Stem-loop vvi-MIR169g

Accession

MI0006527

Description

Vitis vinifera vvi-MIR169g precursor miRNA

Literature search

8 open access papers mention vvi-MIR169g
(15 sentences)

Sequence

227725 reads, 925.0 reads per million, 179 experiments

gaaaguauggugCAGCCAAGGAUGACUUGCCGAcucucuacuuagccaucugccuuucuccaaggaggcuugcaguacugaugaagccGGCAAGUUGUCUUUGGCUACAugcuucuuucug
(((((....(((.(((((((((((((((((((.((.((...((((....((((...((((....))))...))))..)))).)))).))))))))))))))))))).)))....)))))..

Structure

--     uaug   C                   A  c  uac    ccau    cuu    c 
  gaaag    gug AGCCAAGGAUGACUUGCCG cu uc   uuag    cugc   ucuc a
  |||||    ||| ||||||||||||||||||| || ||   ||||    ||||   ||||  
  cuuuc    uAC UCGGUUUCUGUUGAACGGc ga ag   aguc    gacg   ggag a
gu     uucg   A                   c  -  --u    --au    uuc    g 

Annotation confidence High

Genome context

gb|CP126655.1|: 22317075-22317195 [+]

Mature vvi-miR169g-5p

• Accession: MIMAT0005682
• Description: Vitis vinifera vvi-miR169g-5p mature miRNA
• Sequence: 13 - CAGCCAAGGAUGACUUGCCGA - 33
• Evidence: experimental ; Array [2]

Mature vvi-miR169g-3p

• Accession: MIMAT0055811
• Description: Vitis vinifera vvi-miR169g-3p mature miRNA
• Sequence: 89 - GGCAAGUUGUCUUUGGCUACA - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558