Stem-loop vvi-MIR169q

Accession

MI0007946

Description

Vitis vinifera vvi-MIR169q precursor miRNA

Literature search

8 open access papers mention vvi-MIR169q
(15 sentences)

Sequence

22049 reads, 116.0 reads per million, 186 experiments

aggguggaauaGAGCCAAGGAUGACUUGCCGGcauuugcaguaagucuauauuaacuggaacagcCGGCAUGUAAUCCUGGCUCUAuuugguccucu
(((((.(((((((((((.((((.((.(((((((..((.((((.(((....))).)))).))..))))))).)).))))))))))))))).)))))..

Structure

--     g           A    G  U       au  g    a   c 
  agggu gaauaGAGCCA GGAU AC UGCCGGc  uu cagu agu u
  ||||| ||||||||||| |||| || |||||||  || |||| |||  
  uccug uuuAUCUCGGU CCUA UG ACGGCcg  aa guca uua a
uc     g           -    A  U       ac  g    a   u 

Annotation confidence High

Genome context

gb|CP126658.1|: 16634810-16634906 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169q

Mature vvi-miR169q-5p

• Accession: MIMAT0006551
• Description: Vitis vinifera vvi-miR169q-5p mature miRNA
• Sequence: 12 - GAGCCAAGGAUGACUUGCCGG - 32
• Evidence: experimental ; Array [2]

Mature vvi-miR169q-3p

• Accession: MIMAT0055872
• Description: Vitis vinifera vvi-miR169q-3p mature miRNA
• Sequence: 66 - CGGCAUGUAAUCCUGGCUCUA - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558