Stem-loop vvi-MIR395a

Accession

MI0006556

Description

Vitis vinifera vvi-MIR395a precursor miRNA

Literature search

6 open access papers mention vvi-MIR395a
(30 sentences)

Sequence

329341 reads, 1925.0 reads per million, 201 experiments

guccccuagagUUCCCUUGAUCACUUCACUAGggagcuucgcuaguuuuaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcugguaccga
....((..((((((((((((.(((((((.((((((((...............).))))))).))))))).))))))))))))..))......

Structure

--gucc  ua            U       C       - uucgcu 
      cc  gagUUCCCUUGA CACUUCA UAGggag c      a
      ||  |||||||||||| ||||||| ||||||| |      g
      gg  CUCAAGGGGGUU GUGAAGU auccuuc g      u
agccau  uc            U       C       a uaauuu 

Annotation confidence High

Genome context

gb|CP126648.1|: 6487125-6487216 [+]

Mature vvi-miR395a-5p

• Accession: MIMAT0055839
• Description: Vitis vinifera vvi-miR395a-5p mature miRNA
• Sequence: 12 - UUCCCUUGAUCACUUCACUAG - 32
• Evidence: experimental ; unknown

Mature vvi-miR395a-3p

• Accession: MIMAT0005711
• Description: Vitis vinifera vvi-miR395a-3p mature miRNA
• Sequence: 62 - CUGAAGUGUUUGGGGGAACUC - 82
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558