Stem-loop vvi-MIR169i

Accession

MI0007942

Description

Vitis vinifera vvi-MIR169i precursor miRNA

Literature search

8 open access papers mention vvi-MIR169i
(17 sentences)

Sequence

1025 reads, 17.0 reads per million, 65 experiments

aggguggaauUGAGCCAAGGAUGACUGGCCGUcauuuuucaguugguauuugaggcuuuaacuggucaugcacGGCUGGUUAUCCCUGUCUCCUUuagcuccucu
.((((.(((..(((.((.(((((((((((((((((...((((((((...........))))))))..))).)))))))))))))).)).))).))).))))....

Structure

---a    g   uU   C  A              -   uuu        uauu 
    gggu gaa  GAG CA GGAUGACUGGCCGU cau   ucaguugg    u
    |||| |||  ||| || |||||||||||||| |||   ||||||||    g
    cucg uUU  CUC GU CCUAUUGGUCGGca gua   ggucaauu    a
ucuc    a   -C   U  C              c   -cu        ucgg 

Annotation confidence High

Genome context

gb|CP126658.1|: 16408917-16409021 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169i

Mature vvi-miR169i-5p

• Accession: MIMAT0006547
• Description: Vitis vinifera vvi-miR169i-5p mature miRNA
• Sequence: 11 - UGAGCCAAGGAUGACUGGCCGU - 32
• Evidence: experimental ; Array [2]

Mature vvi-miR169i-3p

• Accession: MIMAT0055868
• Description: Vitis vinifera vvi-miR169i-3p mature miRNA
• Sequence: 74 - GGCUGGUUAUCCCUGUCUCCUU - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558