Stem-loop vvi-MIR156c

Accession

MI0006487

Description

Vitis vinifera vvi-MIR156c precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

11 open access papers mention vvi-MIR156c
(97 sentences)

Sequence

389303 reads, 26109 reads per million, 2 experiments

aaggaauaggUGACAGAAGAGAGUGAGCACacauggucuguucuugcauggguccaugcuugaagcucugcgugcucacucucuaucugucaucuguccucucu
.((((.((((((((((((((((((((((((.((.(((...(((..(((((....)))))..)))))).)).))))))))))))).)))))))))))))))....

Structure

---a    a           -             a  u   cug   uu     g 
    agga uaggUGACAGA AGAGAGUGAGCAC ca ggu   uuc  gcaug g
    |||| ||||||||||| ||||||||||||| || |||   |||  |||||  
    uccu gucuacugucu ucucucacucgug gu ucg   aag  cguac u
ucuc    -           a             c  c   ---   uu     c 

Annotation confidence Not enough data

Genome context

chr4: 848204-848307 [-]

Mature vvi-miR156c

• Accession: MIMAT0005642
• Description: Vitis vinifera vvi-miR156c mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558