Stem-loop vvi-MIR399d

Accession

MI0007961

Description

Vitis vinifera vvi-MIR399d precursor miRNA

Literature search

4 open access papers mention vvi-MIR399d
(9 sentences)

Sequence

21710 reads, 209.0 reads per million, 131 experiments

guaaauuauagagCAGAUUUCUUUUGGCAGAUGGcgaucacaagccaaugugcucaaagggcauugagugugucUGCCAAAGGAGAUUUGCUCGUgaauuuaacu
.((((((...(((((((((((((((((((((((((........))).....((((((......))))))..))))))))))))))))))))))...))))))...

Structure

--g      aua                      -------------------------   gau 
   uaaauu   gagCAGAUUUCUUUUGGCAGAU                         GGc   c
   ||||||   ||||||||||||||||||||||                         |||    
   auuuaa   CUCGUUUAGAGGAAACCGUcug                         ccg   a
uca      gUG                      ugugaguuacgggaaacucguguaa   aac 

Annotation confidence Medium

Genome context

gb|CP126657.1|: 8088153-8088257 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from vvi-MIR399d

Mature vvi-miR399d-5p

• Accession: MIMAT0055885
• Description: Vitis vinifera vvi-miR399d-5p mature miRNA
• Sequence: 14 - CAGAUUUCUUUUGGCAGAUGG - 34
• Evidence: experimental ; unknown

Mature vvi-miR399d-3p

• Accession: MIMAT0006566
• Description: Vitis vinifera vvi-miR399d-3p mature miRNA
• Sequence: 75 - UGCCAAAGGAGAUUUGCUCGU - 95
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467