Stem-loop vvi-MIR156h

Accession

MI0007939

Description

Vitis vinifera vvi-MIR156h precursor miRNA

Literature search

11 open access papers mention vvi-MIR156h
(92 sentences)

Sequence

744 reads, 27.0 reads per million, 76 experiments

ugccucacaaUGACAGAAGAGAGAGAGCAugcuggugggaaaacaauuacaacuuuugaucaucugaucuggaaaugcuuguaagcggcauucucuuggauuguaaucugaauucugccucuaucaucaaccugcccacaaacgauuuccuucaacugagugccuuuccggcuugagccuucugcaugauCAGCUGAGUUCUUUCUGCGCCUUucauuguguccugcc
.((..((((((((.((..((((((((((..((((((.(((((....(((((((((((((((....))))..)))).).))))))..(((((((..(((((....((((........((...............))........))))...)))))..))))))))))))(((....))).........))))))...))))))))).)..)).))))))))....)).

Structure

u  --cu        C  AA -         -Au      ------------------g     acaauuacaacuuuugaucaucugaucuggaaaugcuuguaagc       uc     uugu    ugaauucu  cucuau 
 gc    cacaaUGA AG  G AGAGAGAGC   gcuggu                   ggaaa                                            ggcauuc  uugga    aauc        gc      c
 ||    |||||||| ||  | |||||||||   ||||||                   |||||                                            |||||||  |||||    ||||        ||      a
 cg    guguuacu UC  C UCUUUCUUG   CGACua                   ccuuu                                            ccgugag  aacuu    uuag        cg      u
c  uccu        U  CG G         AGU      guacgucuuccgaguucgg     --------------------------------------------       uc     -ccu    caaacacc  uccaac 

Annotation confidence Not enough data

Genome context

gb|CP126659.1|: 4112428-4112655 [+]

Mature vvi-miR156h-5p

• Accession: MIMAT0006544
• Description: Vitis vinifera vvi-miR156h-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGAGAGCA - 29
• Evidence: not_experimental

Mature vvi-miR156h-3p

• Accession: MIMAT0055865
• Description: Vitis vinifera vvi-miR156h-3p mature miRNA
• Sequence: 191 - CAGCUGAGUUCUUUCUGCGCCUU - 213
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467