miRBase entry: vvi-MIR156h

Stem-loop vvi-MIR156h


Accession
MI0007939
Description
Vitis vinifera vvi-MIR156h precursor miRNA

Literature search
11 open access papers mention vvi-MIR156h
(93 sentences)

Sequence

135 reads, 9 reads per million, 2 experiments
ugccucacaaUGACAGAAGAGAGAGAGCAUgcuggugggaaaacaauuacaacuuuugaucaucugaucuggaaaugcuuguaagcggcauucucuuggauuguaaucugaauucugccucuaucaucaaccugcccacaaacgauuuccuucaacugagugccuuuccggcuugagccuucugcaugaucagcugaguucuuucugcgccuuucauuguguccugcc
.((..((((((((.((..((((((((((..((((((.(((((....(((((((((((((((....))))..)))).).))))))..(((((((..(((((....((((........((...............))........))))...)))))..))))))))))))(((....))).........))))))...))))))))).)..)).))))))))....)).

Structure
u  --cu        C  AA -         -AU      ------------------g     acaauuacaacuuuugaucaucugaucuggaaaugcuuguaagc       uc     uugu    ugaauucu  cucuau 
 gc    cacaaUGA AG  G AGAGAGAGC   gcuggu                   ggaaa                                            ggcauuc  uugga    aauc        gc      c
 ||    |||||||| ||  | |||||||||   ||||||                   |||||                                            |||||||  |||||    ||||        ||      a
 cg    guguuacu uc  c ucuuucuug   cgacua                   ccuuu                                            ccgugag  aacuu    uuag        cg      u
c  uccu        u  cg g         agu      guacgucuuccgaguucgg     --------------------------------------------       uc     -ccu    caaacacc  uccaac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr12: 4108571-4108798 [+]

Database links

Mature vvi-miR156h

Accession MIMAT0006544
Description Vitis vinifera vvi-miR156h mature miRNA
Sequence 11 - UGACAGAAGAGAGAGAGCAU - 30
Evidence not_experimental

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467