Stem-loop vvi-MIR167e

Accession

MI0006519

Description

Vitis vinifera vvi-MIR167e precursor miRNA

Literature search

8 open access papers mention vvi-MIR167e
(13 sentences)

Sequence

6540089 reads, 14474.0 reads per million, 224 experiments

cacuaucaguUGAAGCUGCCAGCAUGAUCUAaacuugcuucccuuugugaacagagaucAGAUCAUGUGGCAGUUUCACCUGuuguuggu
((.((.(((.(((((((((((.((((((((...(((..(((.......)))..)))...))))))))))))))))))).))).)).))..

Structure

--  c  u   u           G        Aaa   gc   cc 
  ca ua cag UGAAGCUGCCA CAUGAUCU   cuu  uuc  u
  || || ||| ||||||||||| ||||||||   |||  |||  u
  gu gu GUC ACUUUGACGGU GUACUAGA   gag  aag  u
ug  u  u   C           -        cua   ac   ug 

Annotation confidence Medium

Genome context

gb|CP126652.1|: 6031611-6031700 [+]

Mature vvi-miR167e-5p

• Accession: MIMAT0005674
• Description: Vitis vinifera vvi-miR167e-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR167e-3p

• Accession: MIMAT0055804
• Description: Vitis vinifera vvi-miR167e-3p mature miRNA
• Sequence: 60 - AGAUCAUGUGGCAGUUUCACCUG - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558