Stem-loop vvi-MIR160b

Accession

MI0006497

Description

Vitis vinifera vvi-MIR160b precursor miRNA

Literature search

4 open access papers mention vvi-MIR160b
(11 sentences)

Sequence

23312 reads, 144.0 reads per million, 195 experiments

aauauuguucUGCCUGGCUCCCUGAAUGCCAUCuaagaagcuuguuaaagaguguugacaaccuuccuauuugGCAUGAGGGGAGUCAAGCAGGcgaaacacuu
....((((.((((.(((((((((..((((((..((.((((.(((((((......))))))).)))).))..))))))..))))))))).)))))))).......

Structure

---aaua    u    C         GA      UC  a    c       ag 
       uugu cUGC UGGCUCCCU  AUGCCA  ua gaag uuguuaa  a
       |||| |||| |||||||||  ||||||  || |||| |||||||   
       agcG GACG ACUGAGGGG  UACGgu  au cuuc aacaguu  g
uucacaa    -    A         AG      uu  c    c       gu 

Annotation confidence High

Genome context

gb|CP126657.1|: 3122721-3122824 [-]

Mature vvi-miR160b-5p

• Accession: MIMAT0005652
• Description: Vitis vinifera vvi-miR160b-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGAAUGCCAUC - 33
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR160b-3p

• Accession: MIMAT0055787
• Description: Vitis vinifera vvi-miR160b-3p mature miRNA
• Sequence: 74 - GCAUGAGGGGAGUCAAGCAGG - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558