Stem-loop vvi-MIR162

Accession

MI0006502

Description

Vitis vinifera vvi-MIR162 precursor miRNA

Literature search

4 open access papers mention vvi-MIR162
(27 sentences)

Sequence

2734918 reads, 13897.0 reads per million, 226 experiments

ugaagucacuGGAUGCAGCGGUUCAUCGAUCucuuccugaaauuguugugaaaaaagcagaucaagaaucggUCGAUAAACCUCUGCAUCCAGcguucacucc
((((..(.((((((((((.((((.(((((((..(((.(((..(((((........))))).))).)))..))))))).)))).)))))))))).)))))....

Structure

----    gu a          C    C       uc   c   aa     gug 
    ugaa  c cuGGAUGCAG GGUU AUCGAUC  uuc uga  uuguu   a
    ||||  | |||||||||| |||| |||||||  ||| |||  |||||    
    acuu  g GACCUACGUC CCAA UAGCUgg  aag acu  gacga   a
ccuc    -- c          U    A       cu   a   -a     aaa 

Annotation confidence High

Genome context

gb|CP126664.1|: 5124097-5124199 [+]

Mature vvi-miR162-5p

• Accession: MIMAT0055790
• Description: Vitis vinifera vvi-miR162-5p mature miRNA
• Sequence: 11 - GGAUGCAGCGGUUCAUCGAUC - 31
• Evidence: experimental ; unknown

Mature vvi-miR162-3p

• Accession: MIMAT0005657
• Description: Vitis vinifera vvi-miR162-3p mature miRNA
• Sequence: 73 - UCGAUAAACCUCUGCAUCCAG - 93
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558