Stem-loop vvi-MIR166f

Accession

MI0006512

Description

Vitis vinifera vvi-MIR166f precursor miRNA

Literature search

8 open access papers mention vvi-MIR166f
(14 sentences)

Sequence

330302140 reads, 1018392.0 reads per million, 226 experiments

uguaguuguggGGAAUGUUGGCUGGCUCGAGGcuuucuugagugauuuuauguauaccucaaaaagcuUCGGACCAGGCUUCAUUCCCCucaacacacuu
(((.((((.((((((((..(.((((.((((((((((.(((((..((.......))..))))))))))))))).)))).)..)))))))).)))))))...

Structure

---   a    u        UU G    C          c     ug  uu 
   ugu guug ggGGAAUG  G CUGG UCGAGGcuuu uugag  au  u
   ||| |||| ||||||||  | |||| |||||||||| |||||  ||  a
   aca caac CCCCUUAC  C GACC GGCUucgaaa aacuc  ua  u
uuc   -    u        UU G    A          -     ca  ug 

Annotation confidence High

Genome context

gb|CP126654.1|: 30092485-30092584 [+]

Mature vvi-miR166f-5p

• Accession: MIMAT0055797
• Description: Vitis vinifera vvi-miR166f-5p mature miRNA
• Sequence: 12 - GGAAUGUUGGCUGGCUCGAGG - 32
• Evidence: experimental ; unknown

Mature vvi-miR166f-3p

• Accession: MIMAT0005667
• Description: Vitis vinifera vvi-miR166f-3p mature miRNA
• Sequence: 69 - UCGGACCAGGCUUCAUUCCCC - 89
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558