Stem-loop vvi-MIR171e

Accession

MI0006540

Description

Vitis vinifera vvi-MIR171e precursor miRNA

Literature search

5 open access papers mention vvi-MIR171e
(17 sentences)

Sequence

37807 reads, 517.0 reads per million, 187 experiments

ggaaaguaagCGAUGUUGGUGAGGUUCAAUCcgaagacggauuuacgaagagccguaaagaacgaucucUGAUUGAGCCGCGCCAAUAUCacuuucugcuaag
(((((((....((((((((((.(((((((((.((.((((..((((((......))))))...)).)))).))))))))).)))))))))))))))))......

Structure

------       aagC          A         c  a  -  -ga      aa 
      ggaaagu    GAUGUUGGUG GGUUCAAUC ga ga cg   uuuacg  g
      |||||||    |||||||||| ||||||||| || || ||   ||||||   
      ucuuuca    CUAUAACCGC CCGAGUUAG cu cu gc   aaaugc  a
gaaucg       ----          G         U  -  a  aag      cg 

Annotation confidence Medium

Genome context

gb|CP126658.1|: 5179839-5179941 [+]

Mature vvi-miR171e-5p

• Accession: MIMAT0055824
• Description: Vitis vinifera vvi-miR171e-5p mature miRNA
• Sequence: 11 - CGAUGUUGGUGAGGUUCAAUC - 31
• Evidence: experimental ; unknown

Mature vvi-miR171e-3p

• Accession: MIMAT0005695
• Description: Vitis vinifera vvi-miR171e-3p mature miRNA
• Sequence: 70 - UGAUUGAGCCGCGCCAAUAUC - 90
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558