Stem-loop vvi-MIR399i

Accession

MI0007963

Description

Vitis vinifera vvi-MIR399i precursor miRNA

Literature search

4 open access papers mention vvi-MIR399i
(9 sentences)

Sequence

129446 reads, 1049.0 reads per million, 219 experiments

aguaguuguaGGGCUUCUCUCCUUCUGGCAGGagauggcaauagauuauccuuuguggcuuaucuccgguguugauuaacuuccaaugaccCGCCAAAGGAGAGUUGCCCUGugacuacuuc
((((((((((((((..((((((((.((((.(((((((((.(((((......))))).)).)))))))(((((((.........)))).))).))))))))))))..))))))))))))))..

Structure

--              UU        C    ------------------------A       -  a     uu 
  aguaguuguaGGGC  CUCUCCUU UGGC                         GGagaug gc auaga  a
  ||||||||||||||  |||||||| ||||                         ||||||| || |||||   
  ucaucaguGUCCCG  GAGAGGAA ACCG                         ccucuau cg uguuu  u
cu              UU        -    Cccaguaaccuucaauuaguugugg       u  g     cc 

Annotation confidence High

Genome context

gb|CP126649.1|: 3928234-3928355 [+]

Mature vvi-miR399i-5p

• Accession: MIMAT0055886
• Description: Vitis vinifera vvi-miR399i-5p mature miRNA
• Sequence: 11 - GGGCUUCUCUCCUUCUGGCAGG - 32
• Evidence: experimental ; unknown

Mature vvi-miR399i-3p

• Accession: MIMAT0006568
• Description: Vitis vinifera vvi-miR399i-3p mature miRNA
• Sequence: 92 - CGCCAAAGGAGAGUUGCCCUG - 112
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558