Stem-loop vvi-MIR166a

Accession

MI0006507

Description

Vitis vinifera vvi-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

8 open access papers mention vvi-MIR166a
(18 sentences)

Sequence

2307355 reads, 154715 reads per million, 2 experiments

gcggguguuuggaaugagguuugauccaagauccuuccuuuuucuccauuaauuccuucaguacuggucaugauuuaguuacuucauaaucgguugaucUCGGACCAGGCUUCAUUCCugacaccaagcu
((.((((((.(((((((((((((.(((.(((((.............................((((((.((((..........)))).)))))).))))).))).))))))))))))).))))))..)).

Structure

-  -g      u             a   a     cuuccuuuuucuccauuaauuccuucagu      c    uuua 
 gc  gguguu ggaaugagguuug ucc agauc                             acuggu auga    g
 ||  |||||| ||||||||||||| ||| |||||                             |||||| ||||     
 cg  ccacag CCUUACUUCGGAC AGG Ucuag                             uggcua uacu    u
u  aa      u             C   C     ----------------------------u      a    ucau 

Annotation confidence Not enough data

Genome context

chr8: 3302797-3302926 [-]

Mature vvi-miR166a

• Accession: MIMAT0005662
• Description: Vitis vinifera vvi-miR166a mature miRNA
• Sequence: 100 - UCGGACCAGGCUUCAUUCC - 118
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558