Stem-loop vvi-MIR169d

Accession

MI0006524

Description

Vitis vinifera vvi-MIR169d precursor miRNA

Literature search

8 open access papers mention vvi-MIR169d
(15 sentences)

Sequence

13092 reads, 35.0 reads per million, 138 experiments

gaguggaaugCAGCCAAGAAUGAUUUGCCGGaauuuauauauagugagaagagaagaggcuauaggcuuucacauauauagugaacccuGGCAAGUUGUCCUUGGCUACAuuugauucuc
((((.(((((.(((((((.((((((((((((..(((((((((((((((.........((((...))))))))).))))).)))))..)))))))))))).))))))).))))).))))..

Structure

--    g     C       A            aa     -     -     aagagaaga    a 
  gagu gaaug AGCCAAG AUGAUUUGCCGG  uuuau auaua gugag         ggcu  
  |||| ||||| ||||||| ||||||||||||  ||||| ||||| |||||         |||| u
  cuua uuuAC UCGGUUC UGUUGAACGGuc  aagug uauau cacuu         ucgg  
cu    g     A       C            cc     a     a     ---------    a 

Annotation confidence High

Genome context

gb|CP126658.1|: 16357631-16357750 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from vvi-MIR169d

Mature vvi-miR169d-5p

• Accession: MIMAT0005679
• Description: Vitis vinifera vvi-miR169d-5p mature miRNA
• Sequence: 11 - CAGCCAAGAAUGAUUUGCCGG - 31
• Evidence: not_experimental

Mature vvi-miR169d-3p

• Accession: MIMAT0055809
• Description: Vitis vinifera vvi-miR169d-3p mature miRNA
• Sequence: 90 - GGCAAGUUGUCCUUGGCUACA - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467