Stem-loop vvi-MIR845b

Accession

MI0007975

Description

Vitis vinifera vvi-MIR845b precursor miRNA

Literature search

4 open access papers mention vvi-MIR845b
(7 sentences)

Sequence

6894 reads, 52.0 reads per million, 200 experiments

uuucacuugauuaguuccuucaugaguuauuucaagcaaucuccaaauuuccuuagcagauuuacauuggcauauucuauuauauucauuccuauccauagcacauugcaaaguaaaaacgacuuuagcauuuaaUUGAAAAUUUCUUCUAUCAagcucauuccauucuugcuugaguuuuggaaccaaaacuccaucaacuaauuuagugggaaaaguugggccaucuucaaugacaucccauacaucuaaaucaguugauuguaaguaccaagucauucuaacuuuccaauagggauagucgguucccguaaagaauggagcucuauguuuugaacaauuuucaguuugagaugagcuugauggaacaaccauuuuccucuuagaugauuaagucuuaagcaagaggucUAGCUCUGAUACCAAUUGAUAaaacaaaggc
.........(((((((...(((.((((((((((..((..............(((.((((........(((.(((..................)))))).......)))).))).......(((((...(((((((..((((((((.(((((((((((((.((((((((((((..((((((((....)))))))).(((((((.(((((((((((...((((((.....))))))....))))).....)))))).)))))))..........((((.......)))).......((((........)))))).))))))))))......(((((((((........)))))))))))))))))))))).))..))))))...)))))))...)))))....))..)))))..))))))))....)))))))...........

Structure

--uuucacuug       -ccu   u     --     aa  aaucuccaaauuuccuuagcagauuuacauuggcauauucuauuauauucauuccuauccauagcacauugcaaaguaaaaac     uag       -UU      --  C             -------------------------------a          -  -------------------------uugaguuuuggaaccaaaacucc       a      -----     -aaa      c 
           auuaguu    uca gaguu  auuuc  gc                                                                                   gacuu   cauuuaa   GAAAAU  UU UUCUAUCAagcuc                                uuccauucuu gc                                                aucaacu auuuag     uggga    guuggg c
           |||||||    ||| |||||  |||||  ||                                                                                   |||||   |||||||   ||||||  || |||||||||||||                                |||||||||| ||                                                ||||||| ||||||     |||||    |||||| a
           UAGUUAA    AGU CUCGA  uggag  cg                                                                                   cugaa   guagauu   cuuuua  aa aagguaguucgag                                gagguaagaa ug                                                uaguuga uaaauc     acccu    uaacuu u
cggaaacaaaA       CCAU   -     Uc     aa  -------------------------------------------------------------------------------aauu     uua       cuc      cc  c             uagaguuugacuuuuaacaaguuuuguaucuc          a  cccuuggcugauagggauaaccuuucaaucuuacugaaccaugaaugu       c      uacau     acag      c 

Annotation confidence Low

Genome context

gb|CP126649.1|: 14293955-14294396 [+]

Mature vvi-miR845b-5p

• Accession: MIMAT0055897
• Description: Vitis vinifera vvi-miR845b-5p mature miRNA
• Sequence: 136 - UUGAAAAUUUCUUCUAUCA - 154
• Evidence: experimental ; unknown

Mature vvi-miR845b-3p

• Accession: MIMAT0006580
• Description: Vitis vinifera vvi-miR845b-3p mature miRNA
• Sequence: 412 - UAGCUCUGAUACCAAUUGAUA - 432
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467