Stem-loop vvi-MIR156b

Accession

MI0006486

Description

Vitis vinifera vvi-MIR156b precursor miRNA

Literature search

11 open access papers mention vvi-MIR156b
(95 sentences)

Sequence

713740 reads, 1978.0 reads per million, 223 experiments

cauugaaaacUGACAGAAGAGAGUGAGCACacagaggcaauuguauaaguuuaugcuuuugcuuuugcguGCUCAUUUCUCUUUCUGUCAGCUuccagugcc
(((((.((.(((((((((((((((((((((.(((((((((..(((((....)))))..))))))))).))))))).))))).))))))))).)).)))))..

Structure

--     a  a         -     -       a         uu     a 
  cauug aa cUGACAGAA GAGAG UGAGCAC cagaggcaa  guaua g
  ||||| || ||||||||| ||||| ||||||| |||||||||  |||||  
  gugac uU GACUGUCUU CUCUU ACUCGug guuuucguu  cguau u
cc     c  C         U     U       c         uu     u 

Annotation confidence High

Genome context

gb|CP126651.1|: 5355936-5356037 [-]

Mature vvi-miR156b-5p

• Accession: MIMAT0005641
• Description: Vitis vinifera vvi-miR156b-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [2]

Mature vvi-miR156b-3p

• Accession: MIMAT0055778
• Description: Vitis vinifera vvi-miR156b-3p mature miRNA
• Sequence: 71 - GCUCAUUUCUCUUUCUGUCAGCU - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558