Stem-loop vvi-MIR156b

Accession

MI0006486

Description

Vitis vinifera vvi-MIR156b precursor miRNA

Literature search

11 open access papers mention vvi-MIR156b
(96 sentences)

Sequence

395127 reads, 26499 reads per million, 2 experiments

cauugaaaacUGACAGAAGAGAGUGAGCACacagaggcaauuguauaaguuuaugcuuuugcuuuugcgugcucauuucucuuucugucagcuuccagugcc
(((((.((.(((((((((((((((((((((.(((((((((..(((((....)))))..))))))))).))))))).))))).))))))))).)).)))))..

Structure

--     a  a         -     -       a         uu     a 
  cauug aa cUGACAGAA GAGAG UGAGCAC cagaggcaa  guaua g
  ||||| || ||||||||| ||||| ||||||| |||||||||  |||||  
  gugac uu gacugucuu cucuu acucgug guuuucguu  cguau u
cc     c  c         u     u       c         uu     u 

Annotation confidence Not enough data

Genome context

chr4: 5356999-5357100 [-]

Mature vvi-miR156b

• Accession: MIMAT0005641
• Description: Vitis vinifera vvi-miR156b mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558