Stem-loop vvi-MIR395m

Accession

MI0006568

Description

Vitis vinifera vvi-MIR395m precursor miRNA

Literature search

6 open access papers mention vvi-MIR395m
(23 sentences)

Sequence

342575 reads, 1981.0 reads per million, 198 experiments

guccccuagaGUUCCCUUGAACACUUCACUGgggaccuucucuaguuauaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcuggugccau
....((..((((((((((((((((((((.((((((...((..((....))..)).)))))).))))))))))))))))))))..))......

Structure

--gucc  ua                    C      ccu  uc  g 
      cc  gaGUUCCCUUGAACACUUCA UGggga   uc  ua u
      ||  |||||||||||||||||||| ||||||   ||  ||  
      gg  CUCAAGGGGGUUUGUGAAGU auccuu   ag  au u
uaccgu  uc                    C      --c  ua  a 

Annotation confidence High

Genome context

gb|CP126648.1|: 6516619-6516710 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from vvi-MIR395m

Mature vvi-miR395m-5p

• Accession: MIMAT0055851
• Description: Vitis vinifera vvi-miR395m-5p mature miRNA
• Sequence: 11 - GUUCCCUUGAACACUUCACUG - 31
• Evidence: experimental ; unknown

Mature vvi-miR395m-3p

• Accession: MIMAT0005723
• Description: Vitis vinifera vvi-miR395m-3p mature miRNA
• Sequence: 62 - CUGAAGUGUUUGGGGGAACUC - 82
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558